This file forms the assessable “reproducible analysis” component of your Independent Project
Remove the instruction text (ie this text) and replace it with your work.
As you make changes commit them to git and push to github. Ensure your final changes are pushed to github by the deadline. You will be assessed on code you write in this file (which must be submitted via github). If you also need to write a slurm script or any other kind of code files be sure to submit those to git for assessment.
In previous assignments you were required to knit your assignment to pdf format for submission to LearnJCU. You will be using a different process for this report This time you should knit your file to produce a github_document (it is already setup to do this). If you knit successfully this process will produce a file called analysis.md which you should check in to git and push to github. In addition, the knitting process may produce a folder with images in it. Make sure you add this folder and all its contents to git and push it to github as well. If everything works you should be able to view your nicely formatted report directly on github by selecting the analysis.md file.
This is like an extended methods section for your main report. In this file you will actually display code blocks as well as important outputs from code (such as figures).
This section can be as long as required, but less than 5 pages is recommended.
Further instructions on this section can be found in the guide.